PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2117s0052.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 525aa    MW: 58250 Da    PI: 5.6232
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2117s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-173683148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+  Ed++l+d+v+++G g+W+++ ++ g+ R++k+c++rw ++l
  Cagra.2117s0052.1.p 36 KGPWSSAEDDILIDYVNKHGEGNWNAVQKHTGLFRCGKSCRLRWANHL 83
                         79******************************************9986 PP

2Myb_DNA-binding53.65.2e-1789132146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++++eE++l+v++++++G++ W++ a++++ gRt++++k++w++
  Cagra.2117s0052.1.p  89 KGAFSQEEEQLIVELHAKMGNR-WARMAAHLP-GRTDNEIKNYWNT 132
                          799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0016931.9E-2711524IPR016310Transcription factor, GAMYB
PROSITE profilePS5129415.5283183IPR017930Myb domain
SuperFamilySSF466896.36E-3033130IPR009057Homeodomain-like
SMARTSM007176.5E-153585IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-233790IPR009057Homeodomain-like
CDDcd001671.33E-113883No hitNo description
PfamPF139219.5E-163999No hitNo description
PROSITE profilePS5129426.31684138IPR017930Myb domain
SMARTSM007172.7E-1788136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2591137IPR009057Homeodomain-like
CDDcd001671.36E-1291132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSYTSTDDSD QNESPAAADD NGSDCRSRWE GSGLKKGPWS SAEDDILIDY VNKHGEGNWN  60
AVQKHTGLFR CGKSCRLRWA NHLRPNLKKG AFSQEEEQLI VELHAKMGNR WARMAAHLPG  120
RTDNEIKNYW NTRIKRRQRA GLPLYPPEMH VEVLEWSQEY AKSRIMGEDT RHSDFLQLGS  180
CQSNFFFDNL NFVTDIVPGA SSDLADTTGY KNLGNAASST RYGNFMTPIM PSSKRLWESE  240
LLYPGCSSTI KQEFPSPEQF QNTYPQKISK TCSFSVPCDV DHPLFGNQHS PVMIPDSHTP  300
TDGIVPSSKP SYGAVKLELP SFQYSEATFD QWKKSSSPPH SDLLDPFDAY IQSPPPLTGR  360
EESDYFSNCD TGLLDMLLLE AKIRNNTTKN SLYKSCASTI PSADLGEVTV SQTKSEEFDN  420
SLKSLVRSEI STQQYADGIS LRQRGKKRKP LLDITRPDVL LASSWLDHGL GIVKETGSMS  480
DALAVLLGDD IGNDNMHTNV GASSGVGSCS WSNMPPVCQM TELP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-312513713127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440448LRQRGKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4119690.0AF411969.1 Arabidopsis thaliana putative transcription factor MYB33 (MYB33) mRNA, complete cds.
GenBankAK1189370.0AK118937.1 Arabidopsis thaliana At5g06100 mRNA for putative transcription factor MYB33, complete cds, clone: RAFL21-27-I01.
GenBankAY5196160.0AY519616.1 Arabidopsis thaliana MYB transcription factor (At5g06100) mRNA, complete cds.
GenBankBT0060490.0BT006049.1 Arabidopsis thaliana clone U51311 putative MYB family transcription factor (At5g06100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287507.10.0hypothetical protein CARUB_v10000715mg
TrEMBLR0H6G30.0R0H6G3_9BRAS; Transcription factor
STRINGfgenesh2_kg.6__546__AT5G06100.30.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38022859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.30.0myb domain protein 33